Quoth Jester
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As you're (probably) aware, the original Doctor Who ran from 1963-1989. At first, the Doctor was a very enigmatic character, a man who kept many secrets from everyone, even his traveling companions. As time went on, and more and more about the Doctor, his race, and his history was revealed.
- The Time Lords being revealed, and given a name, at the end of season 6.
- The Master being introduced in season 8, proving that there were other "renegade" Time Lords.
- The events of The Three Doctors introduced the character of Omega and showed more about the Time Lords.
- The stories "The Deadly Assassin" and "The Invasion of Time" explored more of Time Lord society.
- The story "State of Decay" gives another small bit of Time Lord history, about how they fought a war with a race of giant vampires under the guidance of Rassilon.
- The story "The Horns of Nimon" showed just why the Time Lords have such a restrictive policy as to the topic of "interference" with other races.
- The story "The Brain of Morbius" shows yet another bit of Time Lord history and shows that the Master is not the only Time Lord who became a criminal.
- The return of Omega in "The Arc of Infinity."
- The events of "The Five Doctors."
- The entirety of season 23, "The Trial of a Time Lord" reveals even more about the Time Lords, and that there are darker forces at work on Gallifrey than even the Doctor had previously imagined.
With all of this, the aura of mystery surrounding the Doctor had faded, leaving him appearing to be just another Time Lord, bouncing around from place and having a penchant for interfering.
But a man named Andrew Cartmel, along with Ben Aaronovich and Marc Platt, came up with a way to bring some of the mystery and wonder back to the character of the Doctor. To that end, that liberally sprinkled hints throughout the tenure of Sylvester McCoy's three seasons as the Doctor that he was more than "just another Time Lord." In particular, the stories "Silver Nemesis," "Remembrance of the Daleks," "Ghost Light," and "The Curse of Fenric."
The basics of the plan ran something like this. In the dawn of Time Lord society, there were two great figures. Omega, a stellar engineer who developed a powerful device later known as the "Hand of Omega," a stellar manipulator that he could use to transform a star into a new power source for his race, a black hole that became known as the Eye of Harmony. However, Omega was trapped in the collapse of the star, and vanished from the universe. Rassilon was the one who was able to harness the power of the Eye of Harmony, balancing it against Gallifrey itself and thus providing the Time Lords with a limitless supply of energy, which he then used to create time travel technology (it's hinted at that all TARDIS draw their power from the Eye, at least in part). However, Rassilon was a cruel, ruthless man, who used his power to construct a vicious game, the Death Zone, and used a Time Scoop to pluck up creatures from throughout space and time, dump them in the Zone, and watch them fight to the death.
But, as with all things, there is more to the story. Whispers of a mysterious figure, known as The Other, who stood beside Omega and Rassilon at the dawn of Time Lord society. The intent of the Masterplan was to establish that the Doctor is this Other, a Time Lord (or at least, the reincarnation of one) who saw the dawn of their society, and knows many things that have been hidden.
Unfortunately when the series was canceled in 1989, the Masterplan never came to full fruition. But it was used as background for the writing of many of the novels that took place after the series ended, and the novel "Lungbarrow" finally reveals what the Doctor really is, and how he knows the many mysterious things that he does.



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